I have been using chlorahexadine for years to treat mouth rot.
I use it in a spray bottle. I know that it sounds like it would not be enjoyable for the snake but neither is the mouth rot. I hold the snake and spray from the side to try and clean out the mouth rot. I do it as a daily treatment for the first 2-3 days and then every other day until it is cleared up. But i do not know the severity of your animal use your discretion.

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