I'm answering you post about the incubation of your eggs here along with the one about the paper. I'm no expert, but I will tell you the best that I can.
Its not unusual for part of a second clutch after only one breeding to be fertile...but if most or all of the first clutch is fertile, I have found that the second clutch isn't usually totally fertile. The timing of the mating within the female's cycle plays a part in this.
If there is NOT any mold growing on the eggs, then I wouldn't worry about it although if you move the eggs carefully to a new container, it shouldn't hurt.
You said that some still had "some sand on top so I thought those could be the ones going bad"...usually the sand won't cause a problem if its washed sandbox sand. I don't know if any other kind can be a problem or not since I only use washed sandbox sand in the egglaying chambers.
You asked..."Can anybody tell me how long can take to an egg to go bad if not fert."...usually a coupe of weeks.
You asked..."what could be the reason for start molding at 4 months?"...it could happen if something contaminated the container or the eggs are going bad/dying for some reason.
You asked..."If anything changed in the incubation, how soon will I see the effects on the eggs?"...lower moisture/humidity changes should show up fairly quickly by dimpling in of the eggs. Other than that...I'm not sure what to say. (In this post you said that nothing changed.)
You said..."I incubate at 72-79/80 (fluctations), humidity in the incubator is 30-40%, in the "test cup" is 82-85% (have 1 cup with thermometer probes and hygrometer and no eggs, same mixture of vermiculite/water and holes in the lid as for the cups with eggs)"...temps sound good...I never measure the humidity. I go by how much moisture is on the lid and sides of the container the eggs are in for veiled eggs.
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You asked..."What about temperature, do you think an increase in temperature would trigger the end of the diapause or, it would end anyway after a while?"...not sure what to say about this. All I can tell you is that when we have had a heat wave part way through the incubation, the eggs have hatched sooner. I never tried to find out if diapause had ended.
You said..."I know somebody suggests to increase the temp after so many months of incubation, others just keep the same temps (with minimal fluctuation) for the entire incubation and eggs hatch"...my veiled eggs are incubated at about 78 or 79F with fluctuations due to the incubator being open to room temperatures. (My incubator consists of a wooden/screen form placed over a people's heating pad set so that the temperature in the containers is right. The containers are set on the screen.)The only fluctuations or changes in temperature are due to room temperature cooling at night and warming up during the day. If we have a heat wave, then it eventually reaches the area where the eggs are kept....and like I said, if the eggs are a good part of the way through incubation, they hatch earlier than they would normally when there's a heatwave.
You said..."I think that if something was not right, they would have gone bad much earlier"...I would have thought so too...but I have seen some eggs look good until well into the incubation only to have something go wrong and the eggs failed (not with veiled eggs though). Some eggs are more sensitive to changes in the moisture in the container and some to heat fluctuations.
You asked..."Do you have any advice to give to this regard?"...don't throw out any eggs until you are sure that they are no good. Some surprisingly bad looking eggs have hatched for me.
Are all the eggs that are going bad the same size as the ones that aren't? Have you had any dimple in? Have they grown since they were laid?
Hope this has helped!