I was hoping that someone with more Diamondback experience would take this one, but I'll give 'er a try.
I do have experience dealing with chelonian fungal infections. One of the best things that you can do is to keep the turtle dry. For a period of several weeks, keep the turtle in a dry enclosure for most of the day and all night. Place the turtle in the water for only an hour or two per day to feed and rehydrate. This alone should do wonders for curing the fungus. Unless your turtle is very young, the dry time shouldn't harm him/her.
Also, there are some very effective fungicides that are available at the Veterinarian. I can't specifically tell you which one to use, but I know that virtually 100% of basic Vet. clinics will have a fungicidal cream that you can apply. Taking the turtle to a vet will also help to verify that this is in fact a fungal infection.
Some keepers recommend an over-the-counter sulphur treatment. I don't recommend this.
You are probably going to have to address the issues that are causing the problem. Diamondbacks live in basic and varying degrees of saline water naturally. We take them and put them in fresh water with high acidity and low salinity. Water in an outdoor pond will acummulate organic material which degrades, increasing acidity. Also, rainwater is typically more acidic. Your pond water will increase in acidity fairly rapidly overtime. But, you said that you do frequent water changes. My recommendation would be to monitor your water values regularly. Specific gravity can be useful in determining hardness.
I really hope that some people who keep Diamondbacks will share. I don't intimately know the benefits vs. cost of keeping Diamondbacks in freshwater. Also, I don't really know the pH, hardness, and such that you want to shoot for with this species.
Here's an excellent link for Diamondback care. There is a lengthy discussion of water quality and resulting infections thereof.
http://www.neoterrapin.com/care/
Good luck with your turtle...they're amazingly beautiful and intelligent.