Hookworms, or Ancylostoma, sp. can indeed hide in an animal and come out in times of stress. This is due to the mechanism called "visceral larval migrans".
Larval migrans occurs when the larvae of a parasite migrate through the tissues of the host, sometimes even hiding in organs or tissues for a long time in a "spore" or "cyst" form.
Then when the host has a weakened immune system due to stress or other disease, the larvae "wake up" and travel to the gut, where they begin to complete their life cycle.
In addition, if you ever allowed your Dragon to sun himself outdoors, and he had contact with the grass or soil, he could contract hookworms. And yet another way for hookworms to infest a host is through un-washed lettuce or other greens, that contained soil that was infested with eggs.
Here are some informative websites about hookworms and larval migrans:
http://www.cfsph.iastate.edu/Factsheets/pdfs/larva_migrans.pdf
http://www.merck.com/mmhe/sec17/ch196/ch196g.html
And I saved the best for last... here are two quotes:
"Not all the worms that begin this treacherous migration complete it. As they emerge from one tissue to move on to the next, some fall into a state of arrest where they go dormant and encyst. These larvae remain inactive but periodically some will emerge and complete their migration."
and...
"The larva can infect its new host in several ways. One way is to penetrate the host’s skin directly through the feet or belly or whatever part of the skin is touching the ground. Another way for the larva to gain entry to the new host is to be present in soil that is licked and swallowed by the host as it cleans itself."
For this reason, the wise herp keeper will "autoclave" all sand and soil substrates before use. A half hour in a 350 degree (F) oven, in a ceramic tray or dish, will suffice.
This excellent web page is at:
http://www.marvistavet.com/html/body_hookworms.html
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