The biggest concern in releasing hatchlings that are ancestrally from different populations is that you may be introducing foreign genes to a population that could be detrimental.
I'm going to try to relate it to a human condition...it's a stretch, but bare with me. Lactose intolerance is a genetically dominant trait. You only need one copy of the gene to be lactose intolerant. It doesn't develop until pre-teen and teen years. There are very, very few Dutch people with lactose intolerance. That population of people has been dependent upon dairy products for hundreds of years. Lactose intolerant people "died out" of their population long ago. On the other hand, most Asian people are lactose intolerant. Since it is a dominant trait, and they haven't depended heavily upon dairy, it is the rule and not the exception. Say a Dutch couple adopts an Asian child, and the child manages to survive, marry, and reproduce. Some of those children will be lactose intolerant. Maybe a few of them survive and reproduce...you get the idea. If the pure Dutch spouses had married pure Dutch people, their children would most likely have been able to eat dairy. (I'm talking of primitive times. I'm all for multiculturalism!!! These health concerns are basically a non-issue now.)
I know that is a stretch, but it illustrates how a given population is theoretically "genetically best fit" to survive in a specific ecosystem. If you start introducing genes to a population from animals "best fit" for a different ecosystem, it could cause problems.
An animal analogy...some species of birds have different mating calls in different populations. Even though they are basically identical, they won't mate. Translocated birds could displace natives by simple competition, but they would be a reproductive loss.
It is generally accepted that genetic flow should be left to natural immigration and migration of animals, and not artificially by humans.
One more thing...unless you are maintaining your animals in absolutely aseptic conditions; foot baths, positive pressure, autoclaves, etc. there is now way to keep out bacteria, viruses, and fungi. You would be stunned to learn how quickly that stuff builds up in closed captive systems.
There's still a lot of debate about this stuff, and it's all basically theoretical. Maybe we will learn differently some day, but I'd say that this theory is very widely accepted.
Sorry for the long post. I hope this helps.