That is a pretty nice set up. If I were you I would make a few adjustments...
I would use spagnum moss instead of paper towel. This will make your work load much easier because the pH of the spag prevents bacterial growth. I change mine about once per month.
I would also put at least one of those boxes in the middle of the tank. Not on the hot side, but if she lays and it takes you a little while to notice the eggs you might loose some if they are too cool.
As far as feeding, you can do a few things. If you really like to watch them eat then take the FT mice and sit them on top of the tank. give the tank a wiggle to wake up the snake. Come back in half an hour and he will be out looking for food. Personally I would just toss a mouse in there. I really wouldn't worry about substrate injestion. They are pretty good about getting most of it off. And a little wood chip never hurt a decent sized snake before. Remember, their digestive systems pulverize bone. I have never seen a snake get an impaction from ingesting substrate.
Lastly, you might want to throw a spotlight on their during the day. Some people get by with hot spots in the 80s but I feel that its pretty marginal. By using a light on a timer you will create a nice night/day temp swing too.
Overall nice job though. Never stop messing around. If it aint broke...it could always be better.