First of all, let me say thanks to everyone here. I never expected so much help from everyone. Well, at first to treat this infection, I would swap away the puss with a Q tip and then irrigate the eye with water with a little epson salt mixed in. That helped a bit. After a little research on the net, I found some helpful information. Here's the site.....
http://members.tripod.com/~pygmydreams/webpages/rabbits.html
It sounded like my rabbit had sore/weepy eyes. I got a Murine knock off (Murine suggested on the site as treatment). Active ingredients ate 0.5% Polyvinyl alcohol and 0.6% povidone. After about 2 or 3 days of cleaning the eye and applying two drops aftereards, her eyes look all better! Once again, thanks to everyone who helped me out on this.