You have my sympathies, it's always very frustrating to lose a treasured companion this way.
However, something you said in your message made me want to respond for any tortoise enthusiasts out there. It is a common MISCONCEPTION that pyramiding in tortoises is a result of poor diet and is a physical expression of a disease (be it hypertrophy, MBD, whatever). As to date, there is NO scientific evidence to support these views.
Pyramiding growth syndrome(PGS)is very common amongst wild populations where the animals have ready access to their proper diet. I am currently involved with a facility where there is quite a large colony (30 ) of adult Chelonoidis carbonaria that are kept outside, all are given the same diet, and some pyramid while some do not.
The most recent scientific publication that I am aware of ("Influence of environmental humidity and dietary protein on pyramidal growth of carapaces in African spurred tortoises (Geochelone sulcata)" C.S. Wiesner & C. Iben, 2003. J.Anim.Physiol.a.Anim.Nutr.87, 66-74.) shows that high levels of protein in the diet have MINOR but questionable positive effect towards pyramiding, the strongest evidence is that low relative humidity plays a key role in promoting PGS.
However, there is no evidence to claim this is a pathological condition in tortoises.
Sorry for sidetracking the discussion. Lately, I've been "sharing" in your experience as people have been snagging my hatchlings from the communal incubator.