From what you described in your post, I think you have springtails. They're tiny little white/tan bugs that look like worms and are often mistaken for parasites. However, this is just a guess based on personal experience.
Springtails appear in cool moist substrates like cypress mulch or bed-a-beast, often in high numbers. The good news is that they're completely harmless. I've had them in my fire salamander enclosures many times with no ill effects. The feed on decaying substrates and waste products so they can actually benefit a mini ecosystem. Unless their numbers get to high, I usually just leave them.
I'm assuming that your set-up is moist so it's reasonable to assume that these guys are the culprits. However, you should rule out any parasitic organisms to be on the safe side. My advice to you is to change your substrate and have a fecaL float done by a vet. Switch to a quarantine substrate such as paper towels or newspaper for a while and see what happens. If the float comes back negative it's probably springtails and you're in the clear.
PS. Here is a link on springtails
http://www.ext.vt.edu/departments/entomology/factsheets/springta.html
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