If algae grow in your rocks and tank decorations, unless they disturb your sense of beauty, you can let them grow. An exception is the long, hairy kind which also makes the water slimy. Those, you should remove. Algae will grow in healthy water with enough light. They are a sign that you are doing something right.
Do not use chemicals to kill algae!!!
If you don't like the algae, brush them off every time you change the water, change the water more often, use a stronger filter, and add a little salt to the water.
In the wild, it is normal for turtles to grow algae on their shells. It helps them camouflage! In captivity, the algae should be removed every once in a while, since algae can encourage growth of fungus in a confined environment.
To remove the algae, hold your turtle under warm tap water and gently brush it with a soft vegetable brush