How old and big is your female?
If you are concerned she may be too young then you are going to want to be very cautious throughout this whole process. Beardies shouldnt be bred until they are two years of age.
For starters i would seperate the male and the female. For the time being you can just divide the cage but you are going to want to permanantly house them seperately from now on anyways, so start looking for another cage for one of them. Just to clarify, you are going to want to keep them seperate for a few reasons...1. if the female is too young to be bred safetly then you dont want another mishap like this to happen, if you are careful then she should be fine during this one, but repeated breeding for a young female (or any aged female) si very dangerous. 2. Housing one male with one female is never a good idea, the male tends to constantly want to breed and your female will not have enough time between mating to replenish herself and she will eventually become sick.
So anyway, for now you can just stick a divider in there until you have found a new cage for one of them. The Bearded Dragon Manual, by Phillipe De Vosjoli has a good section on beardie breeding. You want to keep your female full of good high calcium food. She is going to need extra calcium to properly make her eggs, and if she is on the young side she is still going to be using it to grow. So tons of calcium rich veggies, heavily supplemented veggies and bugs, and some pinkies and waxworms will be good to keep her weight up. I cant remember off the top of my head how many days it takes them before they lay, but that information is readily availble on just about any beardie website or in any book. You want to provide your female with a nesting box as well. I used a large cat litter pan filled with a mixture of damp play sand and potting soil. There are a variety of different nesting materials you can use. Once your female lays the eggs you want to transfer them carefully, without turning them, into the incubator. The incubation process basically involves steady temperature and humidity levels until the eggs hatch.
Another thing to keep in mind, you want to prepare for the babies ahead of time. Have several cages set up with several basking sites and hiding spots in each one. Its hard saying how many eggs she will lay, and how many of them will be fertile, but you want to be prepared. You will need to seperate the babies into small groups (ideally no more than 3-4 together in a tank the size of a 20gallon long). They will eat like pigs, so you will also want to order pinhead crickets in mass quanitity and set up tanks of those at your house. Feed the babies 3times a day and move them into larger tanks and smaller groups as they get older.
The best thing to do is do as much reading on breeding as possible, get some really good books and look at some websites and read read read read!
The other thing...after your female has the eggs she will need extra fattening and calcium enriched foods still for a little while as she regains her strength.
good luck!
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0.1 Bearded dragon
0.1 mexican Black kingsnake
1.1 Leopard Gecko's
0.0.1 Tokay Gecko
1.0 Blue Tongue Skink
0.0.1 Reverse Okeetee Corn
0.1 Anerythristic Corn
0.0.1 Red Tegu
0.1 Bullmastiff
4.1 Cats