The only suggestion I have since that is the case, is to make sure you have lots of hides and visual barriers so that the female can avoid him. If the male's behavior continues or escalates, I'd recommend removing the bullied female. You could try to re-introduce her when she's ovulating and more likely to be receptive to the male's advances.
Some males and females will never get along. I have a female that "masculinized". She was at least 10 years old at the time and she developed buldges, started beating up the male and mating with the females (she'd laid eggs for the previous 6 years I'd had her). The females she bred with never produced fertile clutches, and from that point on all my males have treated "her" as another male and she's never laid another egg. She's been living the single life for the last two years. Although she appeared to have developed hemipenes, I don't think that the musculature to retract them was as well developed and she was prone to prolapses.
-Alice