>>Actually I downloaded it about a month ago. it confuses the crap out of me so I have been sticking to the mp morpher until I have time to tinker with the new one.
Oh, ok. Well you should only use the tabsheet 'Calculation' if you simply want to predict some results. If your male is an Amel hetero for bloodred you click tabsheet Male and then pull down the 'Amel/Ultra' pulldownbox. Select Amel here. En do the same at the Bloodred pulldown box and select het Bloodred. Then you succesfully entered the genes for the male. Now you can do the same for the female by entering the genes for the female on the tabsheet 'Female'.
The first tab is for people who want to enter their own genes. That is why it is generic. You can enter your own genes and make you own ini-files for let's say African house snakes (if you wanted to).
I hope it is a bit clearer now.. 
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Marcel Poots (Holland)
'Where is your crown King Nothing?' James Hettfield
The ultimate cornpredictor